dotfiles
Add zshrc
Juan Nunez-Iglesias
(Jul 3, 2026, 5:00 PM +0200)
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zshrc/zshrc
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zshrc/zshrc
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# If you come from bash you might have to change your $PATH.
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# export PATH=$HOME/bin:/usr/local/bin:$PATH
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# Path to your oh-my-zsh installation.
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export ZSH="$HOME/.oh-my-zsh"
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# Set name of the theme to load --- if set to "random", it will
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# load a random theme each time oh-my-zsh is loaded, in which case,
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# to know which specific one was loaded, run: echo $RANDOM_THEME
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# See https://github.com/ohmyzsh/ohmyzsh/wiki/Themes
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ZSH_THEME="amuse"
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# Set list of themes to pick from when loading at random
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# Setting this variable when ZSH_THEME=random will cause zsh to load
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# a theme from this variable instead of looking in $ZSH/themes/
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# If set to an empty array, this variable will have no effect.
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# ZSH_THEME_RANDOM_CANDIDATES=( "robbyrussell" "agnoster" )
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# Uncomment the following line to use case-sensitive completion.
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# CASE_SENSITIVE="true"
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# Uncomment the following line to use hyphen-insensitive completion.
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# Case-sensitive completion must be off. _ and - will be interchangeable.
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# HYPHEN_INSENSITIVE="true"
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# Uncomment one of the following lines to change the auto-update behavior
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# zstyle ':omz:update' mode disabled # disable automatic updates
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# zstyle ':omz:update' mode auto # update automatically without asking
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# zstyle ':omz:update' mode reminder # just remind me to update when it's time
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# Uncomment the following line to change how often to auto-update (in days).
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# zstyle ':omz:update' frequency 13
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# Uncomment the following line if pasting URLs and other text is messed up.
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# DISABLE_MAGIC_FUNCTIONS="true"
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# Uncomment the following line to disable colors in ls.
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# DISABLE_LS_COLORS="true"
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# Uncomment the following line to disable auto-setting terminal title.
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# DISABLE_AUTO_TITLE="true"
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# Uncomment the following line to enable command auto-correction.
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# ENABLE_CORRECTION="true"
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# Uncomment the following line to display red dots whilst waiting for completion.
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# You can also set it to another string to have that shown instead of the default red dots.
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# e.g. COMPLETION_WAITING_DOTS="%F{yellow}waiting...%f"
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# Caution: this setting can cause issues with multiline prompts in zsh < 5.7.1 (see #5765)
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# COMPLETION_WAITING_DOTS="true"
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# Uncomment the following line if you want to disable marking untracked files
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# under VCS as dirty. This makes repository status check for large repositories
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# much, much faster.
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# DISABLE_UNTRACKED_FILES_DIRTY="true"
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# Uncomment the following line if you want to change the command execution time
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# stamp shown in the history command output.
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# You can set one of the optional three formats:
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# "mm/dd/yyyy"|"dd.mm.yyyy"|"yyyy-mm-dd"
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# or set a custom format using the strftime function format specifications,
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# see 'man strftime' for details.
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# HIST_STAMPS="mm/dd/yyyy"
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# Would you like to use another custom folder than $ZSH/custom?
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# ZSH_CUSTOM=/path/to/new-custom-folder
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# Which plugins would you like to load?
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# Standard plugins can be found in $ZSH/plugins/
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# Custom plugins may be added to $ZSH_CUSTOM/plugins/
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# Example format: plugins=(rails git textmate ruby lighthouse)
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# Add wisely, as too many plugins slow down shell startup.
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plugins=(git conda-zsh-completion brew history-substring-search)
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source $ZSH/oh-my-zsh.sh
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unsetopt share_history
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# User configuration
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# export MANPATH="/usr/local/man:$MANPATH"
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# You may need to manually set your language environment
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# export LANG=en_US.UTF-8
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export EDITOR=vim
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# Preferred editor for local and remote sessions
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# if [[ -n $SSH_CONNECTION ]]; then
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# export EDITOR='vim'
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# else
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# export EDITOR='mvim'
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# fi
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# Compilation flags
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# export ARCHFLAGS="-arch x86_64"
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# Set personal aliases, overriding those provided by oh-my-zsh libs,
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# plugins, and themes. Aliases can be placed here, though oh-my-zsh
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# users are encouraged to define aliases within the ZSH_CUSTOM folder.
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# For a full list of active aliases, run `alias`.
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#
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# Example aliases
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# alias zshconfig="mate ~/.zshrc"
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# alias ohmyzsh="mate ~/.oh-my-zsh"
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alias charm="open -a /Applications/PyCharm.app ."
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alias tower="open -a /Applications/Tower.app ."
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alias branch="git branch -a --sort=committerdate --format='%(HEAD)%(color:yellow)%(refname:short)@SEP@%(color:bold green)%(committerdate:relative)@SEP@%(color:magenta)%(authorname)%(color:reset)@SEP@%(color:blue)%(subject)' --color=always | awk -F '@SEP@' '{printf("%-100s %-30s %-20s %s \n", $1, $2, $3, $4)}'"
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# custom functions
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by() {
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python -c "`pbpaste`"
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}
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# >>> mamba initialize >>>
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# !! Contents within this block are managed by 'mamba init' !!
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export MAMBA_EXE='/opt/homebrew/opt/micromamba/bin/micromamba';
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export MAMBA_ROOT_PREFIX='/Users/jni/micromamba';
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__mamba_setup="$("$MAMBA_EXE" shell hook --shell zsh --root-prefix "$MAMBA_ROOT_PREFIX" 2> /dev/null)"
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if [ $? -eq 0 ]; then
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eval "$__mamba_setup"
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else
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alias micromamba="$MAMBA_EXE" # Fallback on help from mamba activate
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fi
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unset __mamba_setup
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# <<< mamba initialize <<<
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alias µ=micromamba
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alias mu=micromamba
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µ activate all
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# rebuilding main env
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nuke() {
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mu deactivate
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mu env remove --name all -y
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mu env create -y -f ~/projects/config/all.yml
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mu activate all
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uv pip uninstall -y napari
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uv pip install -U -e "${HOME}/projects/napari[dev,testing]"
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uv pip install -U -e "${HOME}/projects/skan"
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uv pip install -U -e "${HOME}/projects/affinder"
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uv pip install -U -e "${HOME}/projects/zarpaint"
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}
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# rebuilding main env
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test-napari() {
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mu deactivate
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mu env remove --name napari-pre-release -y
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mu env create -y -n napari-pre-release python=3.12 pip uv
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mu activate napari-pre-release
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#uv pip install --prerelease=allow "napari[all]"
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pip install --pre "napari[all]"
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napari
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}
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pwhich() {
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python -c "import $1; print($1)"
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}
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# bun completions
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[ -s "/Users/jni/.bun/_bun" ] && source "/Users/jni/.bun/_bun"
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# bun
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export BUN_INSTALL="$HOME/.bun"
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export PATH="$BUN_INSTALL/bin:$PATH"