dotfiles
Add nuke function to restart conda env
Juan Nunez-Iglesias
(Jul 3, 2026, 4:15 PM +0200)
fb160905
50b2a46c
+172
+51
conda/environments/all-linux.yml
+51
conda/environments/all-linux.yml
···
1
+
name: all
2
+
channels:
3
+
- conda-forge
4
+
dependencies:
5
+
- python=3.12*
6
+
- pip
7
+
- uv
8
+
- numpy
9
+
- scipy
10
+
- matplotlib
11
+
- napari
12
+
- skan
13
+
- scikit-image
14
+
- scikit-learn
15
+
- ipython
16
+
- pyqt6
17
+
- qt6-wayland
18
+
- statsmodels
19
+
- pint
20
+
- python-graphviz
21
+
- dask
22
+
- xarray
23
+
- distributed
24
+
- altair
25
+
- bokeh
26
+
- datashader
27
+
- toolz
28
+
- cytoolz
29
+
- pandas
30
+
- seaborn
31
+
- jupyter
32
+
- notebook
33
+
- openpyxl
34
+
- pytest
35
+
- pytest-qt
36
+
- pytest-cov
37
+
- coverage
38
+
- imageio
39
+
- tqdm
40
+
- cython
41
+
- numba
42
+
- line_profiler
43
+
- memory_profiler
44
+
- networkx
45
+
- beautifulsoup4
46
+
- plotly
47
+
- zarr
48
+
- ome-zarr
49
+
- skan
50
+
- pip:
51
+
- tensorstore
+50
conda/environments/all-macos.yml
+50
conda/environments/all-macos.yml
···
1
+
name: all
2
+
channels:
3
+
- conda-forge
4
+
dependencies:
5
+
- python=3.12*
6
+
- pip
7
+
- uv
8
+
- numpy
9
+
- scipy
10
+
- matplotlib
11
+
- napari
12
+
- skan
13
+
- scikit-image
14
+
- scikit-learn
15
+
- ipython
16
+
- pyqt6
17
+
- statsmodels
18
+
- pint
19
+
- python-graphviz
20
+
- dask
21
+
- xarray
22
+
- distributed
23
+
- altair
24
+
- bokeh
25
+
- datashader
26
+
- toolz
27
+
- cytoolz
28
+
- pandas
29
+
- seaborn
30
+
- jupyter
31
+
- notebook
32
+
- openpyxl
33
+
- pytest
34
+
- pytest-qt
35
+
- pytest-cov
36
+
- coverage
37
+
- imageio
38
+
- tqdm
39
+
- cython
40
+
- numba
41
+
- line_profiler
42
+
- memory_profiler
43
+
- networkx
44
+
- beautifulsoup4
45
+
- plotly
46
+
- zarr
47
+
- ome-zarr
48
+
- skan
49
+
- pip:
50
+
- tensorstore
+50
conda/environments/all.yml
+50
conda/environments/all.yml
···
1
+
name: all
2
+
channels:
3
+
- conda-forge
4
+
dependencies:
5
+
- python=3.12*
6
+
- pip
7
+
- uv
8
+
- numpy
9
+
- scipy
10
+
- matplotlib
11
+
- napari
12
+
- skan
13
+
- scikit-image
14
+
- scikit-learn
15
+
- ipython
16
+
- pyqt6
17
+
- statsmodels
18
+
- pint
19
+
- python-graphviz
20
+
- dask
21
+
- xarray
22
+
- distributed
23
+
- altair
24
+
- bokeh
25
+
- datashader
26
+
- toolz
27
+
- cytoolz
28
+
- pandas
29
+
- seaborn
30
+
- jupyter
31
+
- notebook
32
+
- openpyxl
33
+
- pytest
34
+
- pytest-qt
35
+
- pytest-cov
36
+
- coverage
37
+
- imageio
38
+
- tqdm
39
+
- cython
40
+
- numba
41
+
- line_profiler
42
+
- memory_profiler
43
+
- networkx
44
+
- beautifulsoup4
45
+
- plotly
46
+
- zarr
47
+
- ome-zarr
48
+
- skan
49
+
- pip:
50
+
- tensorstore
+21
fish/functions/nuke.fish
+21
fish/functions/nuke.fish
···
1
+
function nuke
2
+
mu deactivate
3
+
mu env remove --name all -y
4
+
5
+
switch (uname)
6
+
case Linux
7
+
set yml_file ~/projects/dotfiles/conda/environments/all-linux.yml
8
+
case Darwin
9
+
set yml_file ~/projects/dotfiles/conda/environments/all-macos.yml
10
+
case '*'
11
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set yml_file ~/projects/dotfiles/conda/environments/all.yml
12
+
end
13
+
14
+
mu env create -y -f $yml_file
15
+
mu activate all
16
+
uv pip uninstall -y napari
17
+
uv pip install -U -e "$HOME/projects/napari[dev,testing]"
18
+
uv pip install -U -e "$HOME/projects/skan"
19
+
uv pip install -U -e "$HOME/projects/affinder"
20
+
uv pip install -U -e "$HOME/projects/zarpaint"
21
+
end