dotfiles
Don't use -U and use no-deps for uv pip install
Juan Nunez-Iglesias
(Jul 12, 2026, 1:25 PM +0200)
499a15ac
041adb0c
+61
-9
+19
-2
conda/environments/all-linux.yml
+19
-2
conda/environments/all-linux.yml
···
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31
- jupyter
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- notebook
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- openpyxl
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+
- pre-commit
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- pytest
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+
- pytest-pretty
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- pytest-qt
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- pytest-cov
39
+
- pytest-rerunfailures
40
+
- hypothesis
41
+
- pooch
42
+
- qtconsole
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+
- rich
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+
- bermuda
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+
- pretend
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+
- lxml
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- coverage
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48
- imageio
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+
- tifffile
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+
- h5netcdf
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+
- ruff
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+
- pydantic
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+
- tox
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+
- check-manifest
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- tqdm
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- cython
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- numba
···
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60
- networkx
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- beautifulsoup4
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- plotly
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+
- tensorstore
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- zarr
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- ome-zarr
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- skan
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-
- pip:
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-
- tensorstore
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+
- affinder
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+
- zarpaint
+19
-2
conda/environments/all-macos.yml
+19
-2
conda/environments/all-macos.yml
···
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- jupyter
31
31
- notebook
32
32
- openpyxl
33
+
- pre-commit
33
34
- pytest
35
+
- pytest-pretty
34
36
- pytest-qt
35
37
- pytest-cov
38
+
- pytest-rerunfailures
39
+
- hypothesis
40
+
- pooch
41
+
- qtconsole
42
+
- rich
43
+
- bermuda
44
+
- pretend
45
+
- lxml
36
46
- coverage
37
47
- imageio
48
+
- tifffile
49
+
- h5netcdf
50
+
- ruff
51
+
- pydantic
52
+
- tox
53
+
- check-manifest
38
54
- tqdm
39
55
- cython
40
56
- numba
···
43
59
- networkx
44
60
- beautifulsoup4
45
61
- plotly
62
+
- tensorstore
46
63
- zarr
47
64
- ome-zarr
48
65
- skan
49
-
- pip:
50
-
- tensorstore
66
+
- affinder
67
+
- zarpaint
+18
conda/environments/all.yml
+18
conda/environments/all.yml
···
30
30
- jupyter
31
31
- notebook
32
32
- openpyxl
33
+
- pre-commit
33
34
- pytest
35
+
- pytest-pretty
34
36
- pytest-qt
35
37
- pytest-cov
38
+
- pytest-rerunfailures
39
+
- hypothesis
40
+
- pooch
41
+
- qtconsole
42
+
- rich
43
+
- bermuda
44
+
- pretend
45
+
- lxml
36
46
- coverage
37
47
- imageio
48
+
- tifffile
49
+
- h5netcdf
50
+
- ruff
51
+
- pydantic
52
+
- tox
53
+
- check-manifest
38
54
- tqdm
39
55
- cython
40
56
- numba
···
46
62
- zarr
47
63
- ome-zarr
48
64
- skan
65
+
- affinder
66
+
- zarpaint
49
67
- pip:
50
68
- tensorstore
+5
-5
fish/functions/nuke.fish
+5
-5
fish/functions/nuke.fish
···
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mu env create -y -f $yml_file
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mu activate all
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-
uv pip uninstall -y napari
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-
uv pip install -U -e "$HOME/projects/napari[dev,testing]"
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-
uv pip install -U -e "$HOME/projects/skan"
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-
uv pip install -U -e "$HOME/projects/affinder"
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-
uv pip install -U -e "$HOME/projects/zarpaint"
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+
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for pkg in [napari skan affinder zarpaint]
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uv pip uninstall $pkg
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uv pip install --no-deps -e $HOME/projects/$pkg
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end
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end